When you create a new role by cloning any existing, AAM copies all the capabilities that are assigned to that role. However, in the WordPress core, the role's slug is also a capability. That is why when you clone the Administrator role, a user, that is assigned to the cloned Administrator role will never have the administrator capability and this is one of the most common capabilities that lots of plugins require.
To mitigate this problem, simply create a custom capability administrator and assign it to your cloned role. That will help to give access to all the menu items that Administrator role has.